# This file lists each of the sequences and their descriptors/keywords to look for. Under each name, an ordered list provides
#	the keywords that should be searched for. As soon as an entire keyword line is matched, the search for that sequence
#	ends. Thus, the order of the lines indicates goes from more desirable (higher up) to less desirable (lower down) sequences.

# Specify the beginning of a sequence by the Name: operator. For example, Name: T1w would be a good name for the T1 anatomical.
#	The following lines then indicate each combination of keywords that should be included (+) or excluded (-)

# When the Name: operator is given the string GLOBAL, the following tags will be applied to all entries.

# Comments are indicated by #


######## Dr. Ho's 4xPerfusion study #########

Name: GLOBAL
-localizer 			# No other globals for now. We will keep all of the .json's.

# __________Start with all of the source (non-derived) data__________
Name: T1w
+T1 +3D +Tra -+C		# Most desirable
+T1 +SPGR +Tra -+C
+T1 +SE -+C
+T1 -+C				# Least desirable

Name: T2w
+T2 +AX +TSE -+C
+T2 +AX +TSE +THINS -+C
+T2_Mapping_SIM-TE120ms -+C
+T2 +AX +TSE +THINS
+T2 +AX +TSE
+T2 +TSE
+T2 +AX
+T2 -+C
+T2

Name: T2w-FLAIR
+3D +T2 +FLAIR -+C
+T2 +FLAIR -+C
+FLAIR -+C -T1

Name: DTI_DWI_raw
+DTI +TRACEW -ADC -FA -IVIM
+DTI -ADC -FA -IVIM
+DWI +TRACEW -ADC -FA -IVIM
+DWI -ADC -FA -IVIM
+DW +EPI

Name: T1w-post
+3D +T1 +C
+IRSPGR +T1 +C
+T1 +C

Name: T2m
+T2 +Mapping +T2map

Name: T1m_FA5
+_T1_ +_FA=5

Name: T1m_FA10
+_T1_ +_FA=10

Name: T1m_FA20
+_T1_ +_FA=20

Name: DCE_raw
+DCE +C +TWIST
+DCE +C
+DCE

Name: DSC_raw
+ep2d_perf -RELCBV -RELCBF -RELMTT -match_ep2d_perf

Name: SWI_raw
+_SWI_ -_mIP_

Name: ASL_raw
+_ASL_ +3D -RAINBOW -GRAY
+_ASL_ -RAINBOW -GRAY

Name: IVIM_raw
+_IVIM_ +TRACEW


# __________Let's also try to find as many derived images as possible__________

Name: ADC
+DTI +ADC -FA -IVIM
+DWI +ADC -FA -IVIM
+DW +EPI +ADC -FA

Name: FA
+DTI -ADC +FA -IVIM
+DWI -ADC +FA -IVIM
+DW +EPI -ADC +FA

Name: M0
+T2 +Mapping +M0

Name: R2map
+T2 +Mapping +R2map

Name: SWImIP
+(SW) +_mIP_

Name: DSC_CBV
+ep2d_perf +RELCBV -RELCBF -RELMTT

Name: DSC_CBF
+ep2d_perf -RELCBV +RELCBF -RELMTT

Name: DSC_MTT
+ep2d_perf -RELCBV -RELCBF +RELMTT

Name: DSC_TTP
+ep2d_perf +TTP -RELCBV -RELCBF -RELMTT

Name: DSC_PBP
+ep2d_perf +TTP -RELCBV -RELCBF -RELMTT

Name: DCE_CBV
+CBV -ep2d_perf

Name: DCE_MTT
+MTT -ep2d_perf

Name: ASL_CBF
+ASL +GRAY